The invention relates to the field of high-performance computer numerical simulation technologies and discloses a design project facing the nodes in a multi-layer directly-connected cluster parallel computing system, which consists of a plurality of logic circuit units having independent operation, storage and communication functions. The logic circuit unit at least has a logic circuit unit beinga communication unit capable of directly communicating with other nodes. The other logic circuit units are computing units that execute computation task. Every computing unit is at least in direct communication with the communication unit. The units are different in function and the combination thereof makes the constitution of the node more abundant, flexible and more reliable between nodes and can improve the computing efficiency of node such that the multilayer directly-connected cluster parallel system can much more effectively execute particle simulation.