The invention relates to biological organic compound fertilizer prepared from food garbage and a manufacturing method thereof. The manufacturing method of the biological organic compound fertilizer from food garbage is characterized in that raw materials comprise food garbage, peanut cakes, corn husk chops, bone meal, a rapid biological zymocyte fermenting agent of organic fertilizer, an organic material decomposing agent, lysine, water, ammonium nitrate, monoammonium phosphate, potassium sulfate, triacontanol and compound sodium nitrophenolate; the raw materials are mixed uniformly by a double-shaft blade mixing blender and then are processed into power or particles; and through packaging, the power or the particles are prepared into the biological organic compound fertilizer prepared from food garbage. The biological organic compound fertilizer prepared from food garbage has complete nutrient components, contains various nutrients comprising nitrogen, phosphorus, potassium, multipletrace elements, organic acids and the like for satisfying crop growth needs, does not produce pollution, has a low cost and good benefits, solves the secondary pollution problem of food garbage, protects the environment, saves land, and realizes advantages and effects of solid waste resource integrated utilization.