The invention discloses an intelligent algorithm processing system, which includes a development machine and an execution machine connected through a network system. After receiving algorithm selection, storage, compilation, configuration selection and compilation instructs input by a user, the development machine invokes a corresponding intelligent algorithm module; the compiled intelligent algorithm module is stored; the corresponding intelligent algorithm module is obtained and compiled, and an object file generated through compilation is issued to the execution machine through the networksystem; and the execution machine reads the object file and executes algorithm executable codes. The invention further discloses an intelligent algorithm processing method. The invention provides thedevelopment machine to a user to provide a convenient intelligent algorithm code editing and compiling environment, the user can compile the intelligent algorithm according to industrial field application requirements, and each intelligent algorithm can be used repeatedly and modified after being compiled and stored.