The invention discloses a preparation method of a self-humidifying ordered polymer membrane electrode, belonging to the technical field of membrane electrode preparation. An ordered ion exchange polymer nanotube array prepared through the method is fused together with a polymer membrane and is provided with highly ordered ion, electron and gas mass transfer channels, and electrochemical three-phase reaction interfaces are distributed in the outer surfaces of polymer nanotubes with water storage functions, so that a high-efficiency energy conversion process can be carried out in a self-humidifying manner. A catalyst in a nanoparticle or microparticle state is bonded on the surface of the ion exchange polymer nanotube array to form a catalysis layer and is relatively high in specific surface area and catalytic activity, so that the three-phase reaction interfaces of the membrane electrode are greatly added, the electrochemical polarization, the ohmic polarization and the concentration polarization of the electrode are reduced, the energy conversion efficiency is improved, and the reaction speed is increased. According to the preparation method, a membrane electrochemical reactor system is expected to be remarkably simplified, the energy conversion efficiency and the stability are improved, and the operation life is prolonged.