The invention belongs to the technical field of a microgrid, relates to a harmonic monitoring control system based on a multi-source microgrid, in particular to wind power, photovoltaic and energy storage devices, and provides a microgrid harmonic monitoring control system based on data collection and analysis technologies. The system is mainly composed of a data collection module, a data storage and analysis module and a harmonic information display and control module. The data collection module is connected with the data storage and analysis module, and the data storage and analysis module is connected with the harmonic information display and control module. According to the system, the characteristic of independent distribution of a microgrid harmonic source can be fully used, the harmonic current level in the microgrid is effectively controlled, power supply quality of a microgrid user is improved, damage of harmonics to sensitive devices in the microgrid is reduced, the service life of the devices is prolonged, quality of power output by the microgrid is guaranteed, and grid-connected power generation benefits are improved. The system has good application prospects in a microgrid project containing multiple power electronic devices.