The invention relates to a multifunctional ecological purification system for large-scale circulation breeding water, which is used for exchanging water in a pond and purifying the breeding wastewater in the pond. The purification system comprises an efficient precipitation and filtration region, an ecological breeding purification region, an artificial wetland purification region, a water collecting pond and an automatic water quality monitoring and regulating device, wherein the efficient precipitation and filtration region, the ecological breeding purification region and the artificial wetland purification region are used for purifying a water body, and the automatic water quality monitoring and regulating device is used for monitoring the quality of the water body in the purification system and controlling operation of the purification system. Compared with the prior art, the system can be used for automatically monitoring the water quality in the system, so that water in the pond can satisfy the requirements of aquaculture water after being subjected to circulation treatment of the purification system. Meanwhile, aquatic animals and plants and bottom mud generated in the purification system can be recycled. The system provided by the invention can be applied to purifying large-scale aquaculture wastewater and has good economic and environmental benefits.