A flounder and flatfish engineering pond recirculating aquaculture system belongs to the technical field of marine aquaculture. The system comprises a water storage pond, a back water treatment pond, a coarse filtration pond, a conjoined combination aquaculture pond, a water feeding and drainage system, an oxygen supply device and a water quality monitoring system. On the one hand, the system still uses a traditional earthen pond aquaculture mode for culturing flounder and flatfish to grow in an environment similar to the wild so as to improve the quality of farmed flounder and flatfish. Meanwhile, engineering and systematic arrangement and layout are performed on the outdoor culture earthen pond to achieve factory and information management of flounder and flatfish pond culture, the output of farmed flounder and flatfish such as bastard halibut can reach to 1000-2000kg/mu (one mu equals about 1.667square meters), increasing 5-10 times of the output of traditional large single pond culture, and the culture efficiency and economic and ecological benefits are greatly improved.