The invention discloses a method for designing stability parameters of a self-adapting filter of a self-balancing system of a magnetic suspension rotor. The method comprises the following steps of establishing a radial rotation dynamics differential equation model of the self-balancing system of the magnetic suspension rotor with a gyroscopic effect; converting a real coefficient bivariate gyroscopic coupling system into a complex coefficient univariate equivalent system through complex transformation; calculating a closed-loop transfer function of the complex coefficient univariate equivalent system; determining a start angle range of a root locus, which meets the stability requirement of the self-balancing system, at a critical stable point of an imaginary axis; resolving a stability parameter intersection of the self-adapting filter; finally, determining the stability parameters of the self-adapting filter. While the rotor speed is estimated and tracked in real time so as to improve the self-balancing precision, the stability of the self-balancing system of the magnetic suspension rotor with the gyroscopic effect within a full speed range is ensured. The method disclosed by the invention is simpler and more convenient than other methods, and is especially suitable for practical magnetic suspension rotor systems.