The invention discloses a manual magnetic stirring cup with a cleaning function. The manual magnetic stirring cup with the cleaning function comprises a cup body, an upper cup seat, a lower cup seat, a magnetic stirring particle, magnetic driving particles, a magnetic particle box, a partition plate, a sleeve and cleaning particles. The manual magnetic stirring cup with the cleaning function is characterized in that the magnetic stirring particle is attracted on the upper portion of the upper cup seat by the magnetic driving particles placed in the magnetic particle box, a gear transmission structure is arranged between the upper cup seat and the lower cup seat and comprises three gears meshed with one another, the three gears are a driving gear, a transition gear and a rotary gear respectively, the partition plate is fixedly connected on the upper cup seat, a handle shaft is arranged on the partition plate, the driving gear is connected with the lower cup seat into a whole, the rotary gear is fixedly connected with the sleeve which sleeves a spindle, the magnetic particle box can move circularly along with the rotary gear under drive of the driving gear, a transmission ratio of the gear transmission structure ranges from 5 to 7, and the cleaning particles are placed in the cup body so as to be used for cleaning the cup body after solvend in the cup body is stirred and the cup body is used. The manual magnetic stirring cup with the cleaning function is economic, sanitary, convenient, attractive and fashionable and solves the problems of difficulties in solid solvend dissolving and cleaning.