The invention provides a multidimensional anti-counterfeiting code as well as a manufacture method and a recognition method thereof. The multidimensional anti-counterfeiting code at least comprises an integrated three-layer structure, wherein the three-layer structure comprises a graphic code area, an external recognition code area and an internal verification code area; a graphic code is stored in the graphic code area and comprises n graph filling positions and m graphs which are randomly filled in the n graph filling positions; the permutation and combination of the graphic code area is m(n), wherein both n and m are integers, n is greater than m, n is greater than 5 and m is greater than 3; the external recognition code area is used for storing an external recognition code; after the external recognition code is scanned, commodity information and a comparison graphic code same as or similar to the graphic code stored in the graphic code area are matched; the internal verification code area is used for storing an internal identification code; and after the internal identification code is scanned, commodity management information is matched. The multidimensional anti-counterfeiting code can be effectively prevented from copy, is easy to fabricate and low in manufacture cost.