The invention provides a safety fingerprinting traceablility method for the food packaging material and belongs to the field of a safety analysis and traceablility method for packaging materials. According to the method, firstly, a fingerprint database is established for one or more types of materials at a lower level selected from the following four types of materials: membrane materials, adhesives, printing ink and resin. Based on a method the same with the above operation, the fingerprints of subsequent to-be-measured batches of products are established, and the chemical structure peak or data of the fingerprint information are compared with the fingerprint information of qualified products filed in the fingerprint database of corresponding products. On the condition that the above two types of fingerprint information are substantially matched, the subsequent to-be-measured batches of products meet the requirement. On the condition that the fingerprint information of one or more types of materials are not matched with the filed fingerprint information, the above products substantially do not conform to the filed products. Through the further analysis on the fingerprint information of materials that are not matched with the filed fingerprint information, the types of monomers and additives can be determined. Meanwhile, the types of monomers and additives are compared with the types of available monomers and additives specified in the regulations. On the condition that the types of monomers and additives do not conform to the types of available monomers and additives specified in the regulations at the same time, the source of materials that compromises the safety can be addressed.