The invention relates to a miniature drip irrigation zone anti-clogging detection system. The system comprises a moving rack with a bracket, and two water storage tanks and a control cabinet arranged on the moving rack. A water pump is arranged between the two water storage tanks; the tank bottom of each water storage tank is elliptical; a drain outlet is formed in the bottom of the tank bottom; a water outlet is formed in the side face of the tank bottom; an upper cover composed of two half structures is arranged at the top of each water storage tank; a water inlet pipe hole and a shaft mounting hole are respectively formed in the upper cover; each water storage tank is connected with a gear motor; a stirring device is arranged on the gear motor; the water inlet of the water pump is connected with water outlets of the two water storage tanks; the water outlet of the water pump is connected with two pipelines; one pipeline is connected to a to-be-tested drip irrigation zone through a drip irrigation zone mounting hole; the other pipeline is connected with a water return pipe; the water return pipe is communicated into the two water storage tanks; a water inlet pipe which is communicated into the two water storage tanks is arranged above the water return pipe; and the control cabinet is connected with the water pump and the gear motor. The miniature drip irrigation zone anti-clogging detection system disclosed by the invention is simple in structure, small in occupied area and movable.