The invention discloses a dynamic calibration method for a high-frequency force balance, which comprises the steps of performing whitening on a measurement signal x(t) to acquire a whitened signal z(t); seeking an orthogonal matrix V, enabling the whitened signal z(t) to equal to Vq(t), and thus acquiring a separated signal q(t); performing natural frequency and modal damping ratio recognition on the separated signal in modal coordinates; correcting the separated signal according to recognized parameters; and inversely deducing according to the separated signal to acquire a corrected pneumatic load. According to the invention, separation is performed on a coupling signal, and for independent components acquired by separation, natural frequency and modal damping ratio recognition is performed on the separated signals one by one by adopting a curve fitting method through combining aerodynamic characteristics, so that a dynamic amplification effect of a modal coupling system is corrected and eliminated, a real aerodynamic load spectrum density matrix is acquired finally, the reliability of parameter recognition and corresponding HFFB (High-Frequency Force Balance) dynamic signal calibration can be improved to the maximum extent, and an important basis is laid for subsequent accurate estimation for high-rise building prototype wind-induced responses.