The invention relates to a matrix-type continuous image acquisition analysis system which comprises a box and an image acquisition analysis system body. A base is arranged at the bottom surface of thebox, freely moving arms arranged on the side surfaces of the box, a light source is arranged on the base, sample tables for placing samples are fixedly mounted on the freely moving arms, matrix-typecamera shooting devices are arranged above the sample tables and movably mounted on the freely moving arms, and the image acquisition analysis system body is fixed on one side of the top end of the box and connected with the matrix-type camera shooting devices. The system has the advantages that samples to be acquired are stable and continuously and accurately acquired, and automatic focusing is more convenient and rapider.