The invention discloses a coordinated control method of a multi-energy complementary system, which comprises the following steps: in a day-ahead scheduling stage, determining a start-stop period of adevice with a large inertia link through a day-ahead robust optimal scheduling based on a long-time prediction information of the next day; in the intra-day scheduling stage, determining the output power of the continuously adjustable device by intra-day multi-objective quantum particle swarm optimization based on intra-day short-time prediction information; by using the cooperative optimization of day-ahead and day-within-day scheduling, finally determining the operation mode of the multi-energy complementary system, and realizing the coordinated control of the multi-energy complementary system. While guaranteeing the safe and stable operation condition of the system, the method considers the optimal utilization of resources and realizes the minimum operation cost of the system.