A seismic source inversion uncertainty analysis method, comprising the steps of: resolving seismic source inversion parameters by using a Bayesian statistics method to obtain a prior probability density function of the corresponding seismic source inversion parameters (S10); obtaining seismic source information quantity according to the prior probability density function of the seismic source inversion parameters (S20); obtaining a random uncertainty function and a cognitive uncertainty function according to the seismic source information quantity (S30); and evaluating and determining a seismic source inversion preliminary result by combining the random uncertainty function and the cognitive uncertainty function to obtain an accurate seismic source inversion interpretation result (S40). Also provided are a computer readable storage medium used for realizing the method and an application server used for executing the method. By introducing an information entropy theory, the two types of uncertainty are unitedly quantitatively evaluated on the basis of the information quantity, so as to provide a scientific basis for correct interpretation of an inSAR seismic source inversion result.