The invention discloses a comprehensive control method for frequency regulation of a peak-shaving generator set in a high wind power permeability grid. (1) Automatically generate the primary frequencymodulation compensation instruction F of the generator set and send it to the primary frequency modulation correction module, wherein, the speed unequal rate Delta of the generator set is set to 3%-6%, (2) that primary frequency modulation correction function F1 (x) generate the primary frequency modulation compensation command correction coefficient k1, (3) in the primary frequency modulation correction module, the primary frequency modulation command FP=F*k1 after correction, (4) the load regulation rate V of the unit is not less than 1.5% P/min. The correction coefficient k2 of the secondary frequency modulation compensation command is generated. (5) After correction, the load regulation rate of the secondary frequency modulation unit is VA=V*k2. The load regulation rate of the secondary frequency modulation unit is VA=V*k2. The invention takes into account the dynamic index of the fast response of the primary frequency modulation and the steady index of the secondary frequency modulation compensation in the frequency modulation process of the power network, improves the peak frequency modulation ability in the operation of the power network, and ensures the safe and stable operation of the power network.