A transport control system with linear motor drive applicable for cash transport in a bank. The system uses a main controller, a rail-path, a carrier adapted to be driven along the rail-path by linear motor drive, and a plurality of stator portions coupled to the rail-path to produce a driving force in association with the carrier. Each of the stators includes a stator controller for controlling the driving of the carrier. The stator controller controls the driving of the carrier passing the stator portion to which the stator controller belongs to cause the carrier to reach a destination stator portion.