To pot membranes in a header, a dense, viscous liquid, suspension or, preferably, a thixotropic, water soluble gel, is placed in a header pan in space reserved for a permeate channel. A plurality of hollow fibre membranes are collected together and their open ends are inserted into the gel. A fixing liquid, typically a resin, is placed over the gel. The fixing liquid surrounds each membrane and then solidifies, simultaneously sealing the outer surfaces of the membranes and forming a plug in the opening of the header to complete the permeate channel. After the fixing liquid has solidified, the gel is removed by various means. The space initially occupied by the gel becomes part of the permeate channel after the gel is removed. In one embodiment, membranes are grouped by a cushioning adhesive which later surrounds the membranes where they exit the completed header.