Systems, methods, and computer-readable media for cross-application authentication on a content management system. A client application running at a client device that is not authenticated with a content management system can receive, from a web site associated with the content management system, a request to authenticate with the content management system under a user account used to authenticate a current session between a browser application at the client device and the website with the content management system. The client application can then obtain a uniform resource locator (URL) with a nonce associated with the client application, and send a command to the browser application including the URL and nonce. The command can trigger the browser application to use the URL and nonce to authenticate the client application with the content management system under the user account with which the current session between the browser application and the website is currently authenticated.