A method, system, apparatus, article of manufacture, and computer-readable storage medium provide the ability to merge multiple point cloud scans. A first raw scan file and a second raw scan file (each including multiple points) are imported. The scan files are segmented by extracting segments based on geometry in the scene. The segments are filtered to reduce a number of segments and identify features. A set of candidate matching feature pairs are acquired by coarsely registering features from one scan to features from another scan. The candidate pairs are refined by improving alignment based on corresponding points in the features. The candidate pairs are scored and then merged based on the scores.