A system and method can provide high throughput transactions in a transactional system. A system and method can, via a transaction manager, obtain information on a plurality of resource managers. The transaction manager can further manage a plurality of transaction branches, where each of the plurality of transaction branches can be associated with a different one of the plurality of resource managers. The methods and systems can associate a transaction identifier with each of the plurality of transaction branches, which can result in a plurality of transaction identifiers, where each of the plurality of transaction identifiers can include a branch identifier for each of the plurality of transaction branches. The methods and systems can perform one or more transactional operations on the plurality of transaction branches based on the different transaction identifiers.