A drop batch builder is provided for organizing a plurality of glass sheets into a desired batch arrangement on a conveyor. The drop batch builder includes an upper conveyor line and a lower conveyor line. The upper conveyor has a drop region configured to drop a first glass sheet from the upper conveyor line downwardly onto the lower conveyor line, whereupon the lower conveyor line is configured to convey the first glass sheet along the lower path of substrate travel to the overpass region where the first glass sheet is positioned under the upper conveyor line. Methods of using a drop batch builder are also provided.