In an EPI acquisition sequence for magnetic resonance signals k-space is scanned along sets of lines in k-space along opposite propagation directions, e.g. odd and even lines in k-space. Phase errors that occur due to the opposite propagation directions are corrected for in a SENSE-type parallel imaging reconstruction. The phase error distribution in image space may be initially estimated, calculated form the phase difference between images reconstructed from magnetic resonance signals acquired from the respective sets of k-space lines, or from an earlier dynamic.