A magnetic resonance imaging apparatus includes a gradient magnetic field controller which applies a spatial encoding gradient to a plurality of slices and applies a gradient magnetic field in a first direction with respect to the plurality of slices, a radio frequency (RF) receiver which receives respective magnetic resonance signals from each of the plurality of slices undersampled in a second direction different from the first direction, and an image processor which generates a respective magnetic resonance image of each of the plurality of slices based on the magnetic resonance signals received from the plurality of slices.