A code protection method may include storing, using a processor of a computer, a package file that includes files for an application on a storage device of the computer; transforming, at the processor, a protection target method and/or function selected from a file that includes an execution code among the files, or converting or deleting a library file among the files; regenerating the package file by adding, to the package file, a first protection module file for restoring the transformed protection target method and/or function or a second protection module file for restoring the library file; and providing the regenerated package file over a network.