An imaging apparatus includes an image sensor including a pair of photoelectric conversion units for each of a plurality of microlenses arranged in a matrix of rows and columns, and capable of reading a signal from each row. According to a size of a focus detection area, a camera control unit regularly sets on the image sensor a first area having as many rows in which signals for use in focus detection are read from the image sensor as a first predetermined number of rows, and a second area having as many rows in which signals for use in focus detection are not read as a second predetermined number of rows.