Embodiments of the present disclosure disclose a three-dimensional display device and a driving method thereof. Under the three-dimensional display mode, a plurality of light emitting areas and a plurality of black areas arranged alternately in row direction and column direction are formed in the electroluminescent display panel, and the light emitting area comprises repeatedly arranged R light emitting areas, G light emitting areas, B light emitting areas and X light emitting areas. Under the three-dimensional display mode, by controlling first sub-pixels corresponding to the same light emitting area for providing gray scale information of different viewpoint images to display different gray scale information, the left and right eyes of a person can receive images with different gray scale information when being located at two viewpoints respectively, so as to generate stereoscopic vision and realize naked eye 3D display in a sub-pixel level.