Disclosed herein are systems and methods for initializing and synchronizing a protected real time clock via hardware connections. For example, in some embodiments, a protected real time clock on a trusted execution environment may initialize via a hardware connection to a master clock, which is synchronized to a trusted time source via a hardware connection. In some embodiments, a protected real time clock on a trusted execution environment may initialize to a master clock during a system hardware reset sequence. In some embodiments, before a system is running normally, a real time clock on an integrated Intellectual Property agent may initialize and synchronize to a protected real time clock via a hardware connection. In some embodiments, after a system is running normally, a real time clock on a discrete device may initialize and synchronize to a protected real time clock via a hardware connection.