Power conversion systems and a controller thereof includes a first processing system that computes phase references for respective phase lines of an inverter according to a feedback value, a setpoint value, and a scaling factor to emulate a scaled frequency that is less than a switching frequency, and a second processing system that generates a carrier waveform having the switching frequency, receives the phase reference from the first processing system for each inverter phase line, and compares each phase reference with the carrier waveform to generate pulse width modulated switching control signals for switching devices of the inverter.