A method includes moving a heat-assisted magnetic recording (HAMR) slider relative to a magnetic recording medium. The slider comprises a writer, a writer heater, and a near-field transducer (NFT). For each of a plurality of different head-to media spacings a test tone is written to a track of the medium, the test tone is read and a Discrete Fourier Transform (DFT) of an amplitude of the read test tone is captured. A first DFT curve is generated at a beginning of writing the test tones. A second DFT curve is generated at a saturated state of writing the test tones. An amount of horizontal shift between the first and second DFT curves is computed. The amount of horizontal shift corresponding to writer heater power required to compensate for NFT clearance offset due to laser induced writer protrusion.