Examples disclosed herein provide systems, methods, and software to provide individualized applications to remote desktop sessions. In one example, a method of operating a remote desktop server to provide individualized applications to remote desktop users includes identifying a request from a user for a remote desktop session. The method further includes, in response to the request, identifying one or more applications associated with the user that are stored in at least one hidden volume, and virtually overlaying application objects associated with the one or more applications in at least one non-hidden volume. The method also provides initiating the remote desktop session with the at least one non-hidden volume accessible to the user.