Methods, systems, and apparatus, including computer programs encoded on computer storage media, for processing inputs using an image processing neural network system that includes a spatial transformer module. One of the methods includes receiving an input feature map derived from the one or more input images, and applying a spatial transformation to the input feature map to generate a transformed feature map, comprising: processing the input feature map to generate spatial transformation parameters for the spatial transformation, and sampling from the input feature map in accordance with the spatial transformation parameters to generate the transformed feature map.