Disclosed herein are systems and methods of calculating and mitigating time delays for electric power system samples received by remote data acquisition unit (RDAU), digitized, and transmitted to a receiving intelligent electronic device (IED). The IED may calculate time delays for various RDAUs, and establish wait windows for certain protection operations based on the samples needed for the protection operation and the calculated time delays for the various RDAUs. The IED may detect and report system or time signal anomalies based on changes to the calculated time delays from particular RDAUs.