A neural network apparatus configured to perform a deconvolution operation includes a memory configured to store a first kernel; and a processor configured to: obtain, from the memory, the first kernel; calculate a second kernel by adjusting an arrangement of matrix elements comprised in the first kernel; generate sub-kernels by dividing the second kernel; perform a convolution operation between an input feature map and the sub-kernels using a convolution operator; and generate an output feature map, as a deconvolution of the input feature map, by merging results of the convolution operation.