In embodiments of distributed coordination of mesh network configuration updates, pending commissioning datasets are managed and distributed to coordinate configuration changes of parameters that control participation in, and secure communication over, a mesh network. Pending network commissioning datasets are managed across fragmentation of the mesh network into multiple partitions and subsequent merging of the fragments to ensure that the most recent updates to pending commissioning datasets are propagated to mesh network devices and that all mesh network devices will receive pending commissioning datasets before the time that the pending commissioning dataset becomes the active commissioning dataset for the mesh network.