A system and method for integrated data registration includes at least one host system and a first sensor where the first sensor provides a first input data. The system and method may further include a second sensor where the second sensor provides a second input data, a first navigation data source where the first navigation data source provides a third input data and a second navigation data source where the second navigation data source provides a fourth input data. The system and method may further include at least one non-transitory computer readable storage medium, in operative communication with the host system, first sensor, the second sensor, the first navigation source and the second navigation source, having at least one set of instructions encoded thereon that, when executed by at least one processor, performs operations to perform integrated data registration.