A method for preparing an organic boron fertilizer for engineering wound soil remediation includes a step of: effectively compounding at least one of chitin oligosaccharide, wormcast and silkworm excrement, at least one of water and hydrogen peroxide, an organic boron element solution, sodium alkyl benzene sulfonate and polysorbate under certain conditions. The present invention has significant effects on improving physical and chemical properties of engineering wound soil, enhancing availability of boron element in the soil, preventing plants from physiological diseases caused by lack of boron, and promoting growth and development of the plants.