A board stacking system for stacking board layers into a stack, and associated method are provided. The board stacking system includes a board stacking apparatus adapted to arrange board layers into the stack. The board stacking apparatus having a stack holder comprising an adjustable stacking area for supporting the stack, the stacking area having a length defined between a front edge and a back edge. The board stacking apparatus further having one or more stacking arms operable to receive board layers from a board dispensing mechanism and sequentially arrange the board layers onto the forming stack. The board stacking system further includes a scanner positioned and configured for measuring a width of the board layers and transfer the information to the stack holder to allow adjustment of the length of the stacking area to substantially correspond to the width of the previously measured board layer.