Methods and devices for sorting cottonseeds. Methods include the use of an optical sorter to sort cottonseed by color. Additionally, methods include sorting cottonseed using a gravity table to collect high-density seed (“accepts”) and mid-density seed (“middlings”), followed by sorting the mid-density, and optionally, the high-density seed using an optical sorter to collect dark cottonseed, thereby providing high-quality cottonseed for packaging. Devices and systems comprising one or more gravity tables and one or more optical sorters are provided.