Provided is a heavy-duty pneumatic tire in which not only occurrence of a damage of CBU but also occurrence of pulling-out of a carcass ply can be inhibited, and which has excellent durability. In the tire, beads each include a cover enclosing at least a part of a core. The cover is located, between the core and the carcass ply, in a portion at which the carcass ply encloses the core. The cover is composed of one cover ply including a large number of aligned cover cords and a cover topping rubber covering the cover cords. A ratio of a distance between the cover cords to an outer diameter of a carcass cord is not lower than 0.35 and not higher than 0.85. A difference between a hardness of the cover topping rubber and a hardness of a carcass topping rubber is not less than −5 and not greater than 5.