Provided are a prediction device and the like capable of more accurately simulating an analysis target. The prediction device generates function information for a gene sequence of a living body to be an analysis target based on first model information representing a relevance between sequence information and the function information, the sequence information representing the gene sequence of the analysis target, the function information representing a function potentially expressed by the gene sequence; and generates prediction information representing observation information predicted for the analysis target based on second model information and the function information, the second model information representing a relevance among the function information of the living body, environment information representing an environment around the living body, and the observation information observed for the living body, the function information being generated for the gene sequence of the analysis target.