There is provided a computer implemented method of aligning an automatically generated transcription of an audio recording to a manually generated transcription of the audio recording comprising: identifying non-aligned text fragments, each located between respective two non-continuous aligned text-fragments of the automatically generated transcription, each aligned text-fragment matching words of the manually generated transcription, for each respective non-aligned text fragment: mapping a target keyword of the manually generated transcription to phonemes, mapping the respective non-aligned text fragment to a corresponding audio-fragment of the audio recording, mapping the audio-fragment to phonemes, identifying at least some of the phonemes of the audio-fragment that correspond to the phonemes of the target keyword, and mapping the identified at least some of the phonemes of the audio-fragment to a corresponding word of the automatically generated transcript, wherein the corresponding word is an incorrect automated transcription of the target word appearing in the manually generated transcription.