An apparatus for removing condensed water of an intercooler includes a collecting portion for collecting condensed water, the collecting portion being provided at a lower end of the intercooler; and an ultrasonic wave vibrator provided in the collecting portion, the ultrasonic wave vibrator being operated to introduce the condensed water collected in the collecting portion toward an engine so that the condensed water is vaporized, thereby removing or significantly reducing an amount of condensed water in the intercooler. The apparatus for removing condensed water of the intercooler can prevent engine damage and ignition failure due to the presence of the condensed water in the intercooler.