System and method for performing diagnostics in a multi-cloud system triggers a diagnostic workflow in a first cloud computing environment of the multi-cloud system in response to an event in the multi-cloud system and execute the diagnostic workflow in the first cloud computing environment by identifying components in the multi-cloud system that are affected by the event and obtaining probes for the identified components. For each component of the identified components, a sub-flow of the diagnostic workflow is started to run at least one probe of the obtained probes to generate a diagnostic result of the component. A diagnostic report is generated based on the diagnostic result of each component of the identified components.