Methods, systems, and apparatuses, including computer programs encoded on a computer-readable storage medium for estimating the shape, size, mass, and health of fish are described. A pair of stereo cameras may be utilized to obtain off-axis images of fish in a defined area. The images may be processed, enhanced, and combined. Object detection may be used to detect and track a fish in images. A pose estimator may be used to determine key points and features of the detected fish. Based on the key points, a model of the fish is generated that provides an estimate of the size and shape of the fish. A regression model or neural network model can be applied to the fish model to determine characteristics of the fish.