According to certain embodiments, a foldable electronic device comprises: a flexible display; a first housing in which a first region of the flexible display is positioned; a second housing in which a second region of the flexible display is positioned; a hinge structure interposed between the first housing and the second housing and forming a folding axis; a sensor panel interposed between the flexible display and each of the first housing and the second housing, the sensor panel configured to identify input information of a stylus pen, and including a plurality of first vertical channels interposed the first housing and the first region of the flexible display and a plurality of second vertical channels disposed between the second housing and the second region of the flexible display; and a processor configured to control the sensor panel, wherein the processor is configured to: detect whether the foldable electronic device is folded; when the foldable electronic device is folded, transmit a deviation detection signal to at least one of the plurality of first vertical channels and receive the deviation detection signal through at least one of the plurality of second vertical channels; and correct the input information of the stylus pen using a compensation value corresponding to the received deviation detection signal.