Various embodiments of the present disclosure relate to methods and systems for measuring an injected fuel quantity during multipulse injection events in a common rail of a fuel system including a fuel pump to supply fuel to the common rail. The method, using a control unit, determines if each of the multipulse injection events in a normal operating condition includes a pilot pulse; in response to determining that the pilot pulse is included, obtaining an enforced separation value between the pilot pulse and the main pulse to emulate a single-pulse injection; while the fuel pump is temporarily shut off, performing a temporary enforced separation on a fraction of the multipulse injection events; measuring a pressure change in the common rail during the temporary enforced separation; and resuming the normal operating condition of the multipulse injection events after the pressure change is measured.