In an approach to optimizing dynamic system reconfiguration, a computer receives an active system configuration and a target system configuration from a system administrator, where the target system configuration includes two or more logical partitions. A computer determines one or more reconfiguration actions required to transform the active system configuration to the target system configuration. A computer generates a dependency graph based on the determined reconfiguration actions. A computer divides the dependency graph along the two or more logical partitions. A computer sorts the determined reconfiguration actions by associated dependencies. A computer orders the determined reconfiguration actions based on a priority of each of the two or more logical partitions. A computer runs a first simulation of the determined reconfiguration actions for each of the two or more logical partitions. A computer performs the determined reconfiguration actions for each of the two or more logical partitions.