Provided is a method for a dynamic state estimation of a natural gas network considering dynamic characteristics of natural gas pipelines. The method can obtain a result of the dynamic state estimation of the natural gas network by establishing an objective function of the dynamic state estimation of the natural gas network, a state quantity constraint of a compressor, a state quantity constraint of the natural gas pipeline and a topological constraint of the natural gas network, and using a Lagrange method or an interior point method to solve a state estimation model of the natural gas network. The method takes the topological constraint of the natural gas network into consideration, and employs a pipeline pressure constraint in a frequency domain to implement linearization of the pipeline pressure constraint, thereby obtain a real-time, reliable, consistent and complete dynamic operating state of the natural gas network.